Rami Babas — Biotechnology Engineer

About

By the numbers

/01

CNN crop disease accuracy

/02

ECM proteases analyzed

/03

NGS pipelines built

/04

Professional certifications

Work

Selected work

88–89%

CNN Crop Disease Detection

Convolutional neural network trained for multi-class agricultural pathology classification — exceeding industry benchmarks with rigorous validation across diverse field conditions.

Deep Learning

Accepted

Cancer Prognosis Publication

Integrative survival prediction in breast cancer using ECM protease signatures — accepted in Cancers (MDPI), May 2026. Impact Factor 4.4 · CiteScore 8.8 · Indexed in PubMed.

Publication

4 Pipelines

End-to-End NGS Analysis

RNA A-to-I editing, germline variant calling on GRCh38, and scRNA-seq pseudotime on GSE147821 — reproducible, publication-ready workflows.

Bioinformatics

STU

Cybernetics Research

Smart membrane process modelling and advanced control strategies at Slovak University of Technology — bridging engineering and biotechnology.

Process Control

Publication

Latest research

Accepted — Cancers (MDPI)

Integrative Survival Prediction in Breast Cancer Using Extracellular Matrix Protease Transcript Signatures and Clinical Variables: A Machine Learning Approach

Babas R. · Vynios D.H.* · Kompothrekas A. · Boutsinas B. · Karamanos N.*
Biochemistry, Biochemical Analysis & Matrix Pathobiochemistry Research Group · Dept. of Chemistry, University of Patras, Greece

ISSN 2072-6694 IF 4.4 CiteScore 8.8 PubMed Indexed 05 May 2026

Work

A career in motion

03 / 2025 — 02 / 2026

Breast Cancer Survival Prediction

Master's Thesis · University of Patras, Greece

Multi-model pipeline using 44 ECM proteases (MMP & ADAM families) + clinical variables
Cox screening, subtype-specific analyses, Random Survival Forest with C-index benchmarking
Interactive web interface for patient-level predictions using trained model

07 — 10 / 2025

Researcher in Cybernetics

Slovak University of Technology, Bratislava

Smart Process Control programme — cybernetics & membrane process modelling
Advanced control strategies for improved efficiency and sustainability

2025

NGS Pipeline Development

Independent Research

RNA A-to-I Editing — Python pipeline for Drosophila Mettl3 mutants with gene-level visualization
Germline Variant Calling — FreeBayes on GRCh38, multi-tool consensus, VCF outputs
scRNA-seq (Scanpy) — QC → clustering → pseudotime on GSE147821 (10x Genomics)

01 — 07 / 2023

CNN Crop Diagnostic System

Master's Thesis · ENSBIOTECH, Algeria

Deep learning model achieving 96%+ accuracy for multi-class crop disease classification
Large-scale data analysis with computational modeling and rigorous validation

03 — 04 / 2023

Biotechnology Lab Assistant

Biotechnology Research Center (CRBt), Algeria

Cell culture, sterilization, microscopic analysis, microfluidic device fabrication

05 — 07 / 2022

Pharmaceutical Industry Intern

SNC Officinal Boufama, Algeria

Managed pharmaceutical equipment operations and supervised packaging processes
Strengthened process oversight and attention to detail through hands-on tasks

04 — 06 / 2021

Medical Laboratory Intern

Abdallah Chaoui Polyclinic, Algeria

Performed lab tests and processed samples, ensuring accurate results and quality control
Gained proficiency in advanced equipment handling and informatics tools

Education